Waterscales Cécile Daversin-Catty wins Best presentation award at FEniCS’18

oxfordCongratulations to Cécile Daversin-Catty for winning the Best postdoctoral presentation award at the FEniCS’18 conference at the University of Oxford from March 21-23 2018! Cécile, postdoctoral fellow with the Waterscales project, presented her exciting and versatile work on mixed-dimensional coupled finite elements in FEniCS.

Overall, the Waterscales and Waterscape projects were well represented in the FEniCS’18 program with additional talks from Waterscape post doc Travis Thompson (on Stokes-Biot stable H(div)-based mixed finite element methods for generalized poroelasticity), from SUURPh PhD candidate Eleonora Piersanti (on Parameter-robust discretization and preconditioning of the multiple-network poroelasticity equations), and a poster presentation from Waterscales PhD candidate Ada Ellingsrud (on Numerical modelling of the role of glial cells in cerebral interstitial fluid movement). Well done Waterscapers!

 

New preprint on multilevel Monte Carlo with non-nested meshes available!

Our new paper on Efficient white noise sampling and coupling for multilevel Monte Carlo with non-nested meshes is now available on arXiv!

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When solving stochastic partial differential equations (SPDEs) driven by additive spatial white noise, the efficient sampling of white noise realizations can be challenging. In this paper, we present a new sampling technique that can be used to efficiently compute white noise samples in a finite element method and multilevel Monte Carlo (MLMC) setting. The key idea is to exploit the finite element matrix assembly procedure and factorize each local mass matrix independently, hence avoiding the factorization of a large matrix. Moreover, in a MLMC framework, the white noise samples must be coupled between subsequent levels. We show how our technique can be used to enforce this coupling even in the case of non-nested mesh hierarchies. We demonstrate the efficacy of our method with numerical experiments. We observe optimal convergence rates for the finite element solution of the elliptic SPDEs of interest in 2D and 3D and we show convergence of the sampled field covariances. In a MLMC setting, a good coupling is enforced and the telescoping sum is respected.

Hjernens vannveier in Bergen

This week I’ve been in Odense for a PhD defense (Congratulations to Dr. Christian Valdemar Hansen!), while today I am giving at a talk at Nansensenteret i Bergen for a meeting organized by Norges Tekniske Vitenskapsakademi and Tekna. I will talk about the brain’s waterscape/Hjernens vannveier, of course. This presentation targets a semi-academic, semi-technical audience and the slides are publicly available.

New preprint investigating the effects of uncertainty on cardiac mechanics

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Our new paper on Uncertainty in cardiac myofiber orientation and stiffnesses dominate the variability of left ventricle deformation response is now available on arxiv!

Computational cardiac modelling is currently evolving from a pure research tool to aiding in clinical decision making. Assessing the reliability of computational model predictions is a key factor for clinical use, and uncertainty quantification (UQ) and sensitivity analysis are important parts of such an assessment. In this study, we apply new methods for UQ in computational heart mechanics to study uncertainty both in material parameters characterizing global myocardial stiffness and in the local muscle fiber orientation that governs tissue anisotropy. The uncertainty analysis is performed using the polynomial chaos expansion (PCE) method, which is a non-intrusive meta-modeling technique that surrogates the original computational model with a series of orthonormal polynomials over the random input parameter space. In addition, in order to study variability in the muscle fiber architecture, we model the uncertainty in orientation of the fiber field as an approximated random field using a truncated Karhunen-Loéve expansion. The results from the UQ and sensitivity analysis identify clear differences in the impact of various material parameters on global output quantities. Furthermore, our analysis of random field variations in the fiber architecture demonstrate a substantial impact of fiber angle variations on the selected outputs, highlighting the need for accurate assignment of fiber orientation in computational heart mechanics models.

Waterscales’ Ada Ellingsrud wins Best Poster Award

ada_poster_hbpCongratulations to Ada Ellingsrud for winning the Best Poster Award at last week’s 3rd Human Brain Project School on Future Neuroscience! Ada, PhD candidate with the Waterscales project, presented her exciting research plan on developing computational models of astrocyte water dynamics to explore how osmotic pressure and microscopic fluid flow impact movement of metabolic waste and solutes in the parenchyma. Her poster is available on figshare: Modelling the role of glial cells in cerebral interstitial fluid movement .

 

 

New paper investigating the effect of injection parameters on drug delivery in the spinal canal published!

pizzichelliOur paper titled Numerical study of intrathecal drug delivery to a permeable spinal cord: effect of catheter position and angle is now published. Intrathecal delivery is a procedure involving the release of therapeutic agents into the cerebrospinal fluid (CSF) through a catheter. It holds promise for treating high-impact central nervous system pathologies, for which systemic administration routes are ineffective. In this study we introduce a numerical model able to simultaneously account for solute transport in the fluid and in the spinal cord. Using a Discontinuous Galerkin method and a three-dimensional patient-specific geometry, we studied the effect of catheter position and angle on local spinal cord drug concentration. Based on our simulations, lateral injection perpendicular to the cord turned out to be more effective than other configurations.

New paper on new numerics for an emerging modelling framework for biological cells published!

figure1Our paper on A Cell-Based Framework for Numerical Modeling of Electrical Conduction in Cardiac Tissue is now (open access) published! In this paper, we study a mathematical model of cardiac tissue based on explicit representation of individual cells. In this EMI model, the extracellular (E) space, the cell membrane (M), and the intracellular (I) space are represented as separate geometrical domains. This representation introduces modeling flexibility needed for detailed representation of the properties of cardiac cells including their membrane. In particular, we will show that the model allows ion channels to be non-uniformly distributed along the membrane of the cell. Such features are difficult to include in classical homogenized models like the monodomain and bidomain models frequently used in computational analyses of cardiac electrophysiology.